GTEx calculate eqtl

Description

Calculate custom eQTL for any gene-variant pair in any tissue. Dynamically calculates gene-variant association statistics including p-value, normalized effect size (NES), t-statistic, and genotype data. Works for both significant and non-significant associations. Returns detailed statistics even if association not in precomputed results. Use for: testing specific hypotheses, custom variant-gene pairs, dynamic eQTL analysis, validating findings. Requires all three: gencode_id, variant_id, and ...

Quick Install

Installation

pip install tooluniverse

Tags